Overview - GenomeTools

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“remove debug flag https://github.com/...” was committed by Gordon Gremme
Tuesday Jan 10

Commit [c0705181f5c15b2607f66af3fef1bacd588eb6e3]
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“make ctags.sh work with Exuberant Cta...” was committed by Gordon Gremme 01:21 AM
Commit [ca462cd4dfbe85e94f228c55dcc99e622ebcbd64]
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“update libgenometools.html https://gi...” was committed by Gordon Gremme 12:59 AM
Commit [d00a936f7d88d642a0e6d5025dc9127539ca9125]
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“welcome GenomeTools to 2012! https://...” was committed by Gordon Gremme 12:59 AM
Commit [bfee3ba957ac4f717f4ec9f5cd86903871d033c3]
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“make spacepeak code work with threads...” was committed by Sascha Steinbiss 12:59 AM
Commit [30652c85d3fdc1cc064dd23523476a20fe51244e]
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“refactoring: extract method https://g...” was committed by Gordon Gremme
Tuesday Dec 20

Commit [c8a8fdd90b2661510f40383677dfe0389d2d9440]
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“accept negative and zero sequence ran...” was committed by Gordon Gremme 07:13 PM
Commit [6fe5190b1f703a387337caa80d40cdf5b77e5924]
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“swap target ranges in tidy mode https...” was committed by Gordon Gremme 07:13 PM
Commit [7e89fcaecb454b850d1627c4c218ef08d37d7d86]
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“coding style https://github.com/gordo...” was committed by Gordon Gremme 07:13 PM
Commit [b9a513059c2a3f0509a6aa841c39721d5824e7f2]
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“use tidy mode for sequence region ran...” was committed by Gordon Gremme 07:13 PM
Commit [9187f3ea0cbe35550ea1fe941ec6c2f451a9c00d]
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“increase max test runtime https://git...” was committed by Sascha Steinbiss
Monday Dec 19

Commit [7164705b15bcbfeff110eae7b9b707b4cf850430]
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“increase test run times https://githu...” was committed by Sascha Steinbiss 05:00 PM
Commit [ce9b5ae89d11e0e909f8018b57da5db345f3a2bb]
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“gth: fix memleak https://github.com/g...” was committed by Gordon Gremme 05:00 PM
Commit [ef09468a8aaac432030e968bb907fac574febbcb]
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“remove unused variables https://githu...” was committed by Sascha Steinbiss 05:00 PM
Commit [d78a21f99f4bb329a5e6b2eb976696978b8190fc]
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“only do separate exception counting p...” was committed by Sascha Steinbiss 05:00 PM
Commit [84b7ad2e2aca7943c42b4f449224ab432a8c12b1]
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“Eliminated gt_exactmatchuptomaxdepth....” was committed by Stefan Kurtz 05:00 PM
Commit [209c6d511194d280d72a0611fc364d3d1a448abb]
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“add new Make parameter "testthreads" ...” was committed by Sascha Steinbiss 05:00 PM
Commit [dc52b9ab5b198447490fc2c1f04c6e9ae44d5b8a]
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“lua fixes https://github.com/gordon/g...” was committed by Sascha Steinbiss 05:00 PM
Commit [7855add1fb7933697f6a4ab100df2885055bf4a4]
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“Added missing initialization of pckbu...” was committed by Stefan Kurtz 05:00 PM
Commit [b5de3ad53ff2821961176e4123bc138a60cfce11]
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“Strengthened the assertion regarding ...” was committed by Stefan Kurtz 05:00 PM
Commit [9c4bb5d46ebaf872bda24944c2cac72548c16448]
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“Make prebwt fully functional in getMa...” was committed by Stefan Kurtz 05:00 PM
Commit [dbc5d1d36e7aa9f119f9f6c6b54ed745756b83ff]
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“clean up headers https://github.com/g...” was committed by Sascha Steinbiss 05:00 PM
Commit [e8e350256fab7724837bee69141f2e4668b9e66f]
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“Eliminated alphabet transformations i...” was committed by Stefan Kurtz 05:00 PM
Commit [53d174bdacda5532c02a0af3bab390363d4d5692]
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“cosmetics https://github.com/gordon/g...” was committed by Sascha Steinbiss 05:00 PM
Commit [79ed3298f8facaed724aa8d7f45ad79509dc071b]
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“allow compiling with amalgamation=yes...” was committed by Sascha Steinbiss 05:00 PM
Commit [a221d4fcdde17b6762e2e68e1502cd0ccc189f1a]
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“add lossless compressed implementatio...” was committed by Sascha Steinbiss 05:00 PM
Commit [ac017e42c946fa494960b4a04b73a848c8004314]
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“compensate for separators when calcul...” was committed by Sascha Steinbiss 05:00 PM
Commit [7672029238b1c41a3d417ba50a231656d4056e23]
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“determine subalphabet stats in every ...” was committed by Sascha Steinbiss 05:00 PM
Commit [627c6cb924f918e5b2fb119221b116272cc99416]
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“move gt_encseq_sizeofSWtable out of i...” was committed by Sascha Steinbiss 05:00 PM
Commit [255f0cc7ade3d8cfb154f1311f2cc8ebfb1e354f]
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“initialize unused variables to the sa...” was committed by Sascha Steinbiss 05:00 PM
Commit [7f441383b3b047bebe6c73a6d0cb8c8b359194f9]
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“Implemented tbereservoir as extensibl...” was committed by Stefan Kurtz 05:00 PM
Commit [8a63268cbbfffd91016e6b1df69023ec337f7324]
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“re-enable some suffixerator tests htt...” was committed by Sascha Steinbiss 05:00 PM
Commit [4991e00c555f7880c952724739d8b351d1980cf3]
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“fix type-punning related problems htt...” was committed by Sascha Steinbiss 05:00 PM
Commit [77a2733edb8436b3d8e96016aa1306b6fea6bb73]
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“Some code cosmetics. https://github.c...” was committed by Stefan Kurtz 05:00 PM
Commit [11a95be47424aa6d1186ae145a0edf46104bb823]
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“Use more flexible access to tbereserv...” was committed by Stefan Kurtz 05:00 PM
Commit [74d34e5780ba43ac3ac22a2f58e611a580e69084]
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“Fixed problem when using the prebwt-t...” was committed by Stefan Kurtz 05:00 PM
Commit [a25de673711b4458860d752e393b34225e326c72]
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“add test cases for changed bottomup i...” was committed by Sascha Steinbiss 05:00 PM
Commit [04b2b0cde77ca1dea5ca47c6919f7ee14cc29bd2]
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“introduce breakpoints into descriptio...” was committed by Sascha Steinbiss 05:00 PM
Commit [4aca547304e7ebdb28bd483da2a30e95b9aff424]
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~~“Problems building on Red Hat”~~ was updated by Sascha Steinbiss
Wednesday Dec 14

~~#47~~ / √ resolved
ticket
“Removed referpos. https://github.com/...” was committed by Stefan Kurtz
Friday Dec 02

Commit [a66fd0aeca5006d7327d2343ea7d97900404b680]
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“Introduced referstartpos as a replace...” was committed by Stefan Kurtz 03:59 PM
Commit [26d41c0537473f408a5bac17a40c55fe1429d355]
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“Added -threads 2 for the sktest-scrip...” was committed by Stefan Kurtz 03:59 PM
Commit [b08377aa42dd57b0f248e7c98e453c6b578a5bca]
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“gth: bug fix https://github.com/gordo...” was committed by Gordon Gremme 03:59 PM
Commit [d504eb822c53cef7e0ed2f8a27dcd04697f325b6]
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“delay errorcheck to make sure GT_CFLA...” was committed by Sascha Steinbiss 03:59 PM
Commit [e3488722c2614411581c0e4173da4a809a043cfc]
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“initialize variable https://github.co...” was committed by Sascha Steinbiss 03:59 PM
Commit [69a978bd178256e2302ff439465d21dd0a201b05]
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“make tool splintclean https://github....” was committed by Dirk Willrodt 03:59 PM
Commit [85eb4fe9ea7361f52bb8aed6e1f3e27f68222a8e]
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“Add sam/bam interface https://github....” was committed by Dirk Willrodt 03:59 PM
Commit [8bc4d972332530b3dfd1e92c7f937fea29c2afbc]
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“add sam/bam tests https://github.com/...” was committed by Dirk Willrodt 03:59 PM
Commit [5cb7e85c142299f44069ee186fff320fb827baca]
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“adjust dwmake.rb https://github.com/g...” was committed by Dirk Willrodt 03:59 PM
Commit [9178aadc43f75221f616b63c4ebba47d105ae8ba]
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“add sam/bam interface testtool https:...” was committed by Dirk Willrodt 03:59 PM
Commit [9a0275ec391c57bd80a8ba642b651ed8c3b0dd16]
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The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named 'gt'. It is based on a C library named 'libgenometools'.

1.3.3 release—50% complete

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Genometools GenomeTools

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1.3.3 release—50% complete

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Genometools GenomeTools

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1.3.3 release—50% complete

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