Overview - GenomeTools

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“Error in running ltrharvest” was updated by Sascha Steinbiss
Wednesday May 16

#73 / open
ticket
“Retainids option for gt tools” was updated by Daniel Standage 05:26 AM
#72 / open
ticket
“Error in running ltrharvest” was created by Nathaniel Jue 03:04 AM
#73 / new
ticket
“implement new node types in scripting...” was committed by Sascha Steinbiss
Tuesday May 15

Commit [d961817a64e3d98a17b5bd72076cc1956435b597]
changeset
“gtruby: implement genome node equalit...” was committed by Sascha Steinbiss 11:07 PM
Commit [71148df827a7c13b75c1ea36dc18d2765799e26d]
changeset
“gtruby: fix module name https://githu...” was committed by Sascha Steinbiss 11:07 PM
Commit [de037e525bd385f5520c1ebef9af23d28f2404e3]
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“change MySQL cleanup behaviour https:...” was committed by Sascha Steinbiss 11:07 PM
Commit [7cb1d2f650cca7d72dbd012ac5088c3c9a74af6a]
changeset
“introduce GtMetaNodes https://github....” was committed by Gordon Gremme 11:06 PM
Commit [2bec49b21d812b0ddbed0b9bd0819b5ea4c05c15]
changeset
“fix bug in `gt mergefeat` [#70 state:...” was committed by Gordon Gremme 11:06 PM
Commit [cb95263730aa0c26bf00280d9bcdd0e37523a202]
changeset
“implement new format for MD5 sequence...” was committed by Gordon Gremme 11:06 PM
Commit [a3d3c31e63925f12290a1162c989e3440f6f19a7]
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“verify MD5 sequence IDs https://githu...” was committed by Gordon Gremme 11:06 PM
Commit [e9873bf35fbc2649fc6f84f62d92ea0ddfe1281b]
changeset
~~“Problem with mergefeat”~~ was updated by Sascha Steinbiss 11:06 PM
~~#70~~ / √ resolved
ticket
“radixsort_str: output lcp to stderr h...” was committed by Giorgio Gonnella 11:06 PM
Commit [84c9a494e64faebc0d8cca1fd4432864bf376dc8]
changeset
“Retainids option for gt tools” was updated by Gordon Gremme 09:33 PM
#72 / open
ticket
“Retainids option for gt tools” was updated by Sascha Steinbiss 06:32 PM
#72 / open
ticket
~~“Problem with mergefeat”~~ was updated by Gordon Gremme 04:51 PM
~~#70~~ / √ resolved
ticket
“initialize variable https://github.co...” was committed by Gordon Gremme 04:44 PM
Commit [88f794e4a7b65384b627b5e08102a510992aa009]
changeset
“remove dead struct https://github.com...” was committed by Sascha Steinbiss 04:44 PM
Commit [6bf754dd976b5e28493b7b628533238e9e059efa]
changeset
“improve compatibility in MySQL bindin...” was committed by Sascha Steinbiss 04:44 PM
Commit [5b3a68be8fbe64c568c911fc95d0b110504c7b3b]
changeset
“adjust testcase to new behaviour http...” was committed by Sascha Steinbiss 04:44 PM
Commit [e9e1cf6d436dd5be75002ead48150e7542d230ef]
changeset
“improve GVF compatibility https://git...” was committed by Sascha Steinbiss 04:44 PM
Commit [4aa920539e7111291f4e440041bdbb263e496e9a]
changeset
“Retainids option for gt tools” was created by Daniel Standage
Tuesday May 08

#72 / new
ticket
“output dropped annotations correctly ...” was committed by Sascha Steinbiss 06:49 PM
Commit [49d2b186b740cd61aa1ae642217af55fe558c58f]
changeset
“update test data https://github.com/s...” was committed by Sascha Steinbiss 06:49 PM
Commit [36051434399d42e5092399290c03e0083cc8c3bb]
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“avoid double free https://github.com/...” was committed by Sascha Steinbiss 06:49 PM
Commit [9fd72956a954d34cc8ca417bd9ec91f24c4f4498]
changeset
“add API header to genometools.h https...” was committed by Sascha Steinbiss 06:49 PM
Commit [159e40362e7566f7f820f068fe32ab3ecc754401]
changeset
“Problem with mergefeat” was updated by Gordon Gremme 03:59 PM
#70 / open
ticket
~~“Compilation issues with latest git pull”~~ was updated by Daniel Standage 03:10 PM
~~#71~~ / √ resolved
ticket
~~“Compilation issues with latest git pull”~~ was updated by Sascha Steinbiss 02:16 PM
~~#71~~ / √ resolved
ticket
“Replace modvaluebits and modvaluemask...” was committed by Stefan Kurtz 01:48 PM
Commit [06320f01e830b82f193021d0c6fe400f2722426e]
changeset
“Replace 1-increment by multiincrement...” was committed by Stefan Kurtz 01:48 PM
Commit [907a8b8ee1b7f722a2935af14bc37332fd6fa233]
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“Fixed problems to satisfy splint. htt...” was committed by Stefan Kurtz 01:48 PM
Commit [392fbca42554d137240040bd7b3a28768788b1ac]
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“Moved countocc_increment/accumulateco...” was committed by Stefan Kurtz 01:48 PM
Commit [b47130229d56b0bd228ea334b26422df16594c49]
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“add GtLTRORFAnnotatorStream https://g...” was committed by Sascha Steinbiss 01:48 PM
Commit [03e36da0fd49c6c1b483c87914de4abd172ff4eb]
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“rename 'gt translate' -> 'gt seqtrans...” was committed by Sascha Steinbiss 01:48 PM
Commit [829a5e7a6df663d2c943907649ca7e61223bee5e]
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“fix typo in repfind manual https://gi...” was committed by Sascha Steinbiss 01:48 PM
Commit [7f9277e1953c936e17bb8e69a777e6275e068dc0]
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“allow compiling with cairo=no https:/...” was committed by Sascha Steinbiss 01:48 PM
Commit [5d01812fcf75c9373f2e138f77f543038e93bb3a]
changeset
“make GtArray{In,Out}Streams unsorted ...” was committed by Sascha Steinbiss 01:48 PM
Commit [77ca9a50302fa401d2d2e064a6f98b29a99d9911]
changeset
“always run "block_caption" style call...” was committed by Sascha Steinbiss 01:48 PM
Commit [ccb544b80513e45b3161069bcec93c32efed60dc]
changeset
“add gt_block_get_type() to API https:...” was committed by Sascha Steinbiss 01:48 PM
Commit [4b983a436f868d1386df404b6f11efff8842785a]
changeset
“add GtLTRRefseqMatchStream https://gi...” was committed by Sascha Kastens 01:48 PM
Commit [ccb94b026f032ae8fd32421298da0aaa3ab9f991]
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“add tests for database feature index ...” was committed by Sascha Steinbiss 01:48 PM
Commit [e36908e7eb9b65aa87b884d0f6879abeeaee0cbf]
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“statically link lib{z,bz2} https://gi...” was committed by Sascha Steinbiss 01:48 PM
Commit [d17625455cdbb4d3c91dcdb873f77ddaadc56d6c]
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“add `gt seqids' tool https://github.c...” was committed by Sascha Steinbiss 01:48 PM
Commit [fff00ed659ab6a50d6e502c71d194e5361cd3244]
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“fix documentation for Lua filters htt...” was committed by Sascha Steinbiss 01:48 PM
Commit [722b59c37b18dd5e13b69d1012e2a4925bb57cc0]
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“install ltr/ directory as well https:...” was committed by Sascha Steinbiss 01:48 PM
Commit [30615da3a791641da1c6ddf9a0d3ebaa3e350d54]
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“API documentation https://github.com/...” was committed by Sascha Steinbiss 01:48 PM
Commit [585614b7caa6c0fc9a5db4e970a0b16fc01aa167]
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“memleak fix https://github.com/satta/...” was committed by Sascha Steinbiss 01:48 PM
Commit [8507beb96ff4742466f134b8cadb1b259d9722ad]
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“Lua memleak fixes https://github.com/...” was committed by Sascha Steinbiss 01:48 PM
Commit [e1ad64f83b0de4c0a52bd8c944d9349f52417dc8]
changeset
“allow compiling with amalgamation=yes...” was committed by Sascha Steinbiss 01:48 PM
Commit [31e96867529cf0a116d1535f080b0dd515bd518d]
changeset

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The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named 'gt'. It is based on a C library named 'libgenometools'.

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Genometools GenomeTools

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